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Probes for INS

ACD can configure probes for the various manual and automated assays for INS for RNAscope Assay, or for Basescope Assay compatible for your species of interest.

  • Probes for INS (63)
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SLITRK5 is a negative regulator of hedgehog signaling in osteoblasts

Nature communications

2021 Jul 29

Sun, J;Shin, DY;Eiseman, M;Yallowitz, AR;Li, N;Lalani, S;Li, Z;Cung, M;Bok, S;Debnath, S;Marquez, SJ;White, TE;Khan, AG;Lorenz, IC;Shim, JH;Lee, FS;Xu, R;Greenblatt, MB;
PMID: 34326333 | DOI: 10.1038/s41467-021-24819-w

Hedgehog signaling is essential for bone formation, including functioning as a means for the growth plate to drive skeletal mineralization. However, the mechanisms regulating hedgehog signaling specifically in bone-forming osteoblasts are largely unknown. Here, we identified SLIT and NTRK-like protein-5(Slitrk5), a transmembrane protein with few identified functions, as a negative regulator of hedgehog signaling in osteoblasts. Slitrk5 is selectively expressed in osteoblasts and loss of Slitrk5 enhanced osteoblast differentiation in vitro and in vivo. Loss of SLITRK5 in vitro leads to increased hedgehog signaling and overexpression of SLITRK5 in osteoblasts inhibits the induction of targets downstream of hedgehog signaling. Mechanistically, SLITRK5 binds to hedgehog ligands via its extracellular domain and interacts with PTCH1 via its intracellular domain. SLITRK5 is present in the primary cilium, and loss of SLITRK5 enhances SMO ciliary enrichment upon SHH stimulation. Thus, SLITRK5 is a negative regulator of hedgehog signaling in osteoblasts that may be attractive as a therapeutic target to enhance bone formation.
Regulation and Role of GLI1 in Cutaneous Squamous Cell Carcinoma Pathogenesis.

Front Genet

2019 Dec 04

Pyczek J, Khizanishvili N, Kuzyakova M, Zabel S, Bauer J, Nitzki F, Emmert S, Sch�n MP, Boukamp P, Schildhaus HU, Uhmann A, Hahn H
PMID: 31867038 | DOI: 10.3389/fgene.2019.01185

Cutaneous squamous cell carcinoma (cSCC) is the second most common skin tumor in humans. Although current therapies are sufficient to clear the tumor in many cases, the overall risk of cSCC metastasis is still 5%. Alternative treatment options could help to overcome this situation. Here we focused on the role of the Hedgehog (HH) signaling pathway and its interplay with epidermal growth factor receptor (EGFR) signaling in cSCC. The analyses revealed that, despite lack of Sonic HH (SHH) expression, a subset of human cSCC can express GLI1, a marker for active HH signaling, within distinct tumor areas. In contrast, all tumors strongly express EGFR and the hair follicle stem cell marker SOX9 at the highly proliferative tumor-stroma interface, whereas central tumor regions with a more differentiated stratum spinosum cell type lack both EGFR and SOX9 expression. In vitro experiments indicate that activation of EGFR signaling in the human cSCC cell lines SCL-1, MET-1, and MET-4 leads to GLI1 inhibition via the MEK/ERK axis without affecting cellular proliferation. Of note, EGFR activation also inhibits cellular migration of SCL-1 and MET-4 cells. Because proliferation and migration of the cells is also not altered by a GLI1 knockdown, GLI1 is apparently not involved in processes of aggressiveness in established cSCC tumors. In contrast, our data rather suggest a negative correlation between Gli1 expression level and cSCC formation because skin of Ptch +/- mice with slightly elevated Gli1 expression levels is significantly less susceptible to chemically-induced cSCC formation compared to murine wildtype skin. Although not yet formally validated, these data open the possibility that GLI1 (and thus HH signaling) may antagonize cSCC initiation and is not involved in cSCC aggressiveness, at least in a subset of cSCC.
Response of Gli1+ Suture Stem cells to Mechanical Force upon Suture Expansion

Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research

2022 Apr 20

Jing, D;Chen, Z;Men, Y;Yi, Y;Wang, Y;Wang, J;Yi, J;Wan, L;Shen, B;Feng, JQ;Zhao, Z;Zhao, H;Li, C;
PMID: 35443291 | DOI: 10.1002/jbmr.4561

02 May 2022: This Accepted Article published in error. The article is under embargo and will publish in Early View in July 2022.This article is protected by
Hedgehog signaling promotes basal progenitor expansion and the growth and folding of the neocortex

Nat Neurosci.

2016 May 23

Wang L, Hou S, Han YG.
PMID: 27214567 | DOI: 10.1038/nn.4307.

The unique mental abilities of humans are rooted in the immensely expanded and folded neocortex, which reflects the expansion of neural progenitors, especially basal progenitors including basal radial glia (bRGs) and intermediate progenitor cells (IPCs). We found that constitutively active Sonic hedgehog (Shh) signaling expanded bRGs and IPCs and induced folding in the otherwise smooth mouse neocortex, whereas the loss of Shh signaling decreased the number of bRGs and IPCs and the size of the neocortex. SHH signaling was strongly active in the human fetal neocortex but Shh signaling was not strongly active in the mouse embryonic neocortex, and blocking SHH signaling in human cerebral organoids decreased the number of bRGs. Mechanistically, Shh signaling increased the initial generation and self-renewal of bRGs and IPC proliferation in mice and the initial generation of bRGs in human cerebral organoids. Thus, robust SHH signaling in the human fetal neocortex may contribute to bRG and IPC expansion and neocortical growth and folding.

Arx Expression Suppresses Ventralization of the Developing Dorsal Forebrain.

Sci Rep. 2019 Jan 18;9(1):226.

2019 Jan 18

Lim Y, Cho IT, Shi X, Grinspan JB, Cho G, Golden JA.
PMID: PMID: 30659230 | DOI: DOI:10.1038/s41598-018-36194-6

Early brain development requires a tight orchestration between neural tube patterning and growth. How pattern formation and brain growth are coordinated is incompletely understood. Previously we showed that aristaless-related homeobox (ARX), a paired-like transcription factor, regulates cortical progenitor pool expansion by repressing an inhibitor of cell cycle progression. Here we show that ARX participates in establishing dorsoventral identity in the mouse forebrain. In Arx mutant mice, ventral genes, including Olig2, are ectopically expressed dorsally. Furthermore, Gli1 is upregulated, suggesting an ectopic activation of SHH signaling. We show that the ectopic Olig2 expression can be repressed by blocking SHH signaling, implicating a role for SHH signaling in Olig2 induction. We further demonstrate that the ectopic Olig2 accounts for the reduced Pax6 and Tbr2 expression, both dorsal specific genes essential for cortical progenitor cell proliferation. These data suggest a link between the control of dorsoventral identity of progenitor cells and the control of their proliferation. In summary, our data demonstrate that ARX functions in a gene regulatory network integrating normal forebrain patterning and growth, providing important insight into how mutations in ARX can disrupt multiple aspects of brain development and thus generate a wide spectrum of neurodevelopmental phenotypes observed in human patients.
Molecular profiling of the vestibular lamina highlights a key role for Hedgehog signalling

Development (Cambridge, England)

2023 Apr 01

Qiu, T;Hutečková, B;Seppala, M;Cobourne, MT;Chen, Z;Hovořáková, M;Buchtová, M;Tucker, AS;
PMID: 36971701 | DOI: 10.1242/dev.201464

The vestibular lamina (VL) forms the oral vestibule, creating a gap between the teeth, lips and cheeks. In a number of ciliopathies, formation of the vestibule is defective, leading to the creation of multiple frenula. In contrast to the neighbouring dental lamina, which forms the teeth, little is known about the genes that pattern the VL. Here, we establish a molecular signature for the usually non-odontogenic VL in mice and highlight several genes and signalling pathways that may play a role in its development. For one of these, the Sonic hedgehog (Shh) pathway, we show that co-receptors Gas1, Cdon and Boc are highly expressed in the VL and act to enhance the Shh signal from the forming incisor region. In Gas1 mutant mice, expression of Gli1 was disrupted and the VL epithelium failed to extend due to a loss of proliferation. This defect was exacerbated in Boc/Gas1 double mutants and could be phenocopied using cyclopamine in culture. Signals from the forming teeth, therefore, control development of the VL, coordinating the development of the dentition and the oral cavity.
Rhythmic cilia changes support SCN neuron coherence in circadian clock

Science (New York, N.Y.)

2023 Jun 02

Tu, HQ;Li, S;Xu, YL;Zhang, YC;Li, PY;Liang, LY;Song, GP;Jian, XX;Wu, M;Song, ZQ;Li, TT;Hu, HB;Yuan, JF;Shen, XL;Li, JN;Han, QY;Wang, K;Zhang, T;Zhou, T;Li, AL;Zhang, XM;Li, HY;
PMID: 37262147 | DOI: 10.1126/science.abm1962

The suprachiasmatic nucleus (SCN) drives circadian clock coherence through intercellular coupling, which is resistant to environmental perturbations. We report that primary cilia are required for intercellular coupling among SCN neurons to maintain the robustness of the internal clock in mice. Cilia in neuromedin S-producing (NMS) neurons exhibit pronounced circadian rhythmicity in abundance and length. Genetic ablation of ciliogenesis in NMS neurons enabled a rapid phase shift of the internal clock under jet-lag conditions. The circadian rhythms of individual neurons in cilia-deficient SCN slices lost their coherence after external perturbations. Rhythmic cilia changes drive oscillations of Sonic Hedgehog (Shh) signaling and clock gene expression. Inactivation of Shh signaling in NMS neurons phenocopied the effects of cilia ablation. Thus, cilia-Shh signaling in the SCN aids intercellular coupling.
Osteoarthritis year in review 2021: biology

Osteoarthritis and cartilage

2022 Feb 01

Jiang, Y;
PMID: 34801671 | DOI: 10.1016/j.joca.2021.11.009

This year in review on osteoarthritis biology summarizes a series of research articles published between the 2020 and 2021 Osteoarthritis Research Society International (OARSI) World Congress. Research hightlights were selected and discussed based on the new discoveries of OA's cellular molecular mechanism, anatomical signatures, potential therapeutic targets, and regenerative therapy. The recently developed potential therapeutic targets are summarized, and the research focuses on TGFβ and WNT signaling in joint tissue homeostasis, joint aging and the dynamic of synolytics in OA joint, and the roles of TRP2, LDHA, OSCAR in cartilage homeostasis and OA joints are highlighted. Subsquencially, new anatomical structures and OA features are introduced, such as synovitis-induced venous portal circulation, horiozontal fissures between cartilage and subchondral bone, the cellular derivation of osteophytes formation, OA subtypes, and subchondral remodeling and pain biology. Then, research on the possibility of tissue regeneration in OA joints are discussed; skeletal stem cells in OA cartilage regeneration, and preclinical results of regenerative therapy for meniscus tear and osteochondral tissue morphoghesis are included. At last, the clinical evidence of the importance of delivery site of bone marrow stem cells for OA treatment is discussed. These findings represent advances in our understanding of OA pathophysiology.
ITEM
RNAscope™ Probe- Hs-GEM-C2 ?
Cat No. 1127601-C2

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    Specifications

    Gene :GEM
    Species* :Human
    Species (common):Human
    Entrez Gene ID :2669
    Gene Alias :KIR
    Accession No:NM_005261.4
    Target Region [Base Pairs (bp)] :376 - 1397
    No. of Pairs :20
    Assay Compatibility :N/A
    Shipping Temp :2-8 C
    Storage Temp :2-8 C
    Shelf Life :24 months from the date of manufacturing
    * Please check expiration dates on the reagent package
    Probe description :RNAscope™ Probe - Hs-GEM-C2,Homo sapiens GTP binding protein overexpressed in skeletal muscle (GEM) transcript variant 1 mRNA
    Channel :2
    RNAscope™ Assay Platform :N/A
  • Assay Compatibility
    Human
  • Recommended Controls
  • Product Insert/Data Sheet
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Specifications

Gene :GEM
Species* :Human
Species (common):Human
Entrez Gene ID :2669
Gene Alias :KIR
Accession No:NM_005261.4
Target Region [Base Pairs (bp)] :376 - 1397
No. of Pairs :20
Assay Compatibility :N/A
Shipping Temp :2-8 C
Storage Temp :2-8 C
Shelf Life :24 months from the date of manufacturing
* Please check expiration dates on the reagent package
Probe description :RNAscope™ Probe - Hs-GEM-C2,Homo sapiens GTP binding protein overexpressed in skeletal muscle (GEM) transcript variant 1 mRNA
Channel :2
RNAscope™ Assay Platform :N/A
Human
No Related Documents...
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RNAscope™ 2.5 VS Probe- Mm-Gem ?
Cat No. 574239
Automated Assay for Ventana Systems - RNAscope

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    Specifications

    Gene :GEM
    Species* :Mouse
    Species (common):House Mouse
    Entrez Gene ID :14579
    Gene Alias :AV020497
    Accession No:NM_010276.4
    Target Region [Base Pairs (bp)] :173 - 1179
    No. of Pairs :20
    Assay Compatibility :RNAscope™ VS Reagent Kit-BROWN, RNAscope™ VS Reagent Kit-RED
    Shipping Temp :2-8 C
    Storage Temp :2-8 C
    Shelf Life :24 months from the date of manufacturing
    * Please check expiration dates on the reagent package
    Probe description :RNAscope™ 2.5 VS Probe - Mm-Gem - Mus musculus GTP binding protein (gene overexpressed in skeletal muscle) (Gem) mRNA
    Channel :1
    RNAscope™ Assay Platform :Automated Assay for Ventana Systems - RNAscope
  • Assay Compatibility
    RNAscope™ VS Reagent Kit-BROWN, RNAscope™ VS Reagent Kit-RED
  • Recommended Controls
  • Product Insert/Data Sheet
    No Related Documents...

Specifications

Gene :GEM
Species* :Mouse
Species (common):House Mouse
Entrez Gene ID :14579
Gene Alias :AV020497
Accession No:NM_010276.4
Target Region [Base Pairs (bp)] :173 - 1179
No. of Pairs :20
Assay Compatibility :RNAscope™ VS Reagent Kit-BROWN, RNAscope™ VS Reagent Kit-RED
Shipping Temp :2-8 C
Storage Temp :2-8 C
Shelf Life :24 months from the date of manufacturing
* Please check expiration dates on the reagent package
Probe description :RNAscope™ 2.5 VS Probe - Mm-Gem - Mus musculus GTP binding protein (gene overexpressed in skeletal muscle) (Gem) mRNA
Channel :1
RNAscope™ Assay Platform :Automated Assay for Ventana Systems - RNAscope
RNAscope™ VS Reagent Kit-BROWN, RNAscope™ VS Reagent Kit-RED
No Related Documents...
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RNAscope™ HiPlex Probe- Hs-GEM-T2 ?
Cat No. 1127601-T2
Manual Assay RNAscope HiPlex

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  • View Details

    Specifications

    Gene :GEM
    Species* :Human
    Species (common):Human
    Entrez Gene ID :2669
    Gene Alias :KIR
    Accession No:NM_005261.4
    Target Region [Base Pairs (bp)] :376 - 1397
    No. of Pairs :20
    Assay Compatibility :N/A
    Shipping Temp :2-8 C
    Storage Temp :2-8 C
    Shelf Life :24 months from the date of manufacturing
    * Please check expiration dates on the reagent package
    Probe description :RNAscope™ HiPlex Probe - Hs-GEM-T2,Homo sapiens GTP binding protein overexpressed in skeletal muscle (GEM) transcript variant 1 mRNA
    Channel :N/A
    RNAscope™ Assay Platform :Manual Assay RNAscope HiPlex
  • Assay Compatibility
    Human
  • Recommended Controls
  • Product Insert/Data Sheet
    No Related Documents...

Specifications

Gene :GEM
Species* :Human
Species (common):Human
Entrez Gene ID :2669
Gene Alias :KIR
Accession No:NM_005261.4
Target Region [Base Pairs (bp)] :376 - 1397
No. of Pairs :20
Assay Compatibility :N/A
Shipping Temp :2-8 C
Storage Temp :2-8 C
Shelf Life :24 months from the date of manufacturing
* Please check expiration dates on the reagent package
Probe description :RNAscope™ HiPlex Probe - Hs-GEM-T2,Homo sapiens GTP binding protein overexpressed in skeletal muscle (GEM) transcript variant 1 mRNA
Channel :N/A
RNAscope™ Assay Platform :Manual Assay RNAscope HiPlex
Human
No Related Documents...
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RNAscope™ HiPlex Probe- Hs-GEM-T3 ?
Cat No. 1127601-T3
Manual Assay RNAscope HiPlex

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  • View Details

    Specifications

    Gene :GEM
    Species* :Human
    Species (common):Human
    Entrez Gene ID :2669
    Gene Alias :KIR
    Accession No:NM_005261.4
    Target Region [Base Pairs (bp)] :376 - 1397
    No. of Pairs :20
    Assay Compatibility :N/A
    Shipping Temp :2-8 C
    Storage Temp :2-8 C
    Shelf Life :24 months from the date of manufacturing
    * Please check expiration dates on the reagent package
    Probe description :RNAscope™ HiPlex Probe - Hs-GEM-T3,Homo sapiens GTP binding protein overexpressed in skeletal muscle (GEM) transcript variant 1 mRNA
    Channel :N/A
    RNAscope™ Assay Platform :Manual Assay RNAscope HiPlex
  • Assay Compatibility
    Human
  • Recommended Controls
  • Product Insert/Data Sheet
    No Related Documents...

Specifications

Gene :GEM
Species* :Human
Species (common):Human
Entrez Gene ID :2669
Gene Alias :KIR
Accession No:NM_005261.4
Target Region [Base Pairs (bp)] :376 - 1397
No. of Pairs :20
Assay Compatibility :N/A
Shipping Temp :2-8 C
Storage Temp :2-8 C
Shelf Life :24 months from the date of manufacturing
* Please check expiration dates on the reagent package
Probe description :RNAscope™ HiPlex Probe - Hs-GEM-T3,Homo sapiens GTP binding protein overexpressed in skeletal muscle (GEM) transcript variant 1 mRNA
Channel :N/A
RNAscope™ Assay Platform :Manual Assay RNAscope HiPlex
Human
No Related Documents...

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Description
sense
Example: Hs-LAG3-sense
Standard probes for RNA detection are in antisense. Sense probe is reverse complent to the corresponding antisense probe.
Intron#
Example: Mm-Htt-intron2
Probe targets the indicated intron in the target gene, commonly used for pre-mRNA detection
Pool/Pan
Example: Hs-CD3-pool (Hs-CD3D, Hs-CD3E, Hs-CD3G)
A mixture of multiple probe sets targeting multiple genes or transcripts
No-XSp
Example: Hs-PDGFB-No-XMm
Does not cross detect with the species (Sp)
XSp
Example: Rn-Pde9a-XMm
designed to cross detect with the species (Sp)
O#
Example: Mm-Islr-O1
Alternative design targeting different regions of the same transcript or isoforms
CDS
Example: Hs-SLC31A-CDS
Probe targets the protein-coding sequence only
EnEmProbe targets exons n and m
En-EmProbe targets region from exon n to exon m
Retired Nomenclature
tvn
Example: Hs-LEPR-tv1
Designed to target transcript variant n
ORF
Example: Hs-ACVRL1-ORF
Probe targets open reading frame
UTR
Example: Hs-HTT-UTR-C3
Probe targets the untranslated region (non-protein-coding region) only
5UTR
Example: Hs-GNRHR-5UTR
Probe targets the 5' untranslated region only
3UTR
Example: Rn-Npy1r-3UTR
Probe targets the 3' untranslated region only
Pan
Example: Pool
A mixture of multiple probe sets targeting multiple genes or transcripts

Enabling research, drug development (CDx) and diagnostics

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