ACD can configure probes for the various manual and automated assays for INS for RNAscope Assay, or for Basescope Assay compatible for your species of interest.
Molecular metabolism
2022 Sep 02
Patel, S;Haider, A;Alvarez-Guaita, A;Bidault, G;El-Sayed Moustafa, JS;Guiu-Jurado, E;Tadross, JA;Warner, J;Harrison, J;Virtue, S;Scurria, F;Zvetkova, I;Blüher, M;Small, KS;O'Rahilly, S;Savage, DB;
PMID: 36064109 | DOI: 10.1016/j.molmet.2022.101589
JCI Insight.
2017 May 04
Ban N, Siegfried CJ, Lin JB, Shui YB, Sein J, Pita-Thomas W, Sene A, Santeford A, Gordon M, Lamb R, Dong Z, Kelly SC, Cavalli V, Yoshino J, Apte RS.
PMID: 28469085 | DOI: 10.1172/jci.insight.91455
Glaucoma is the second leading cause of blindness worldwide. Physicians often use surrogate endpoints to monitor the progression of glaucomatous neurodegeneration. These approaches are limited in their ability to quantify disease severity and progression due to inherent subjectivity, unreliability, and limitations of normative databases. Therefore, there is a critical need to identify specific molecular markers that predict or measure glaucomatous neurodegeneration. Here, we demonstrate that growth differentiation factor 15 (GDF15) is associated with retinal ganglion cell death. Gdf15 expression in the retina is specifically increased after acute injury to retinal ganglion cell axons and in a murine chronic glaucoma model. We also demonstrate that the ganglion cell layer may be one of the sources of secreted GDF15 and that GDF15 diffuses to and can be detected in aqueous humor (AH). In validating these findings in human patients with glaucoma, we find not only that GDF15 is increased in AH of patients with primary open angle glaucoma (POAG), but also that elevated GDF15 levels are significantly associated with worse functional outcomes in glaucoma patients, as measured by visual field testing. Thus, GDF15 maybe a reliable metric of glaucomatous neurodegeneration, although further prospective validation studies will be necessary to determine if GDF15 can be used in clinical practice.
iScience
2022 Dec 01
Xie, B;Murali, A;Vandevender, A;Chen, J;Silva, A;Bello, F;Chuan, B;Bahudhanapati, H;Sipula, I;Dedousis, N;Shah, F;O’Donnell, C;Alder, J;Jurczak, M;
| DOI: 10.1016/j.isci.2022.105569
Nature immunology
2023 May 01
Swanson, RV;Gupta, A;Foreman, TW;Lu, L;Choreno-Parra, JA;Mbandi, SK;Rosa, BA;Akter, S;Das, S;Ahmed, M;Garcia-Hernandez, ML;Singh, DK;Esaulova, E;Artyomov, MN;Gommerman, J;Mehra, S;Zuniga, J;Mitreva, M;Scriba, TJ;Rangel-Moreno, J;Kaushal, D;Khader, SA;
PMID: 37012543 | DOI: 10.1038/s41590-023-01476-3
bioRxiv : the preprint server for biology
2023 Jan 20
Florsheim, EB;Bachtel, ND;Cullen, J;Lima, BGC;Godazgar, M;Zhang, C;Carvalho, F;Gautier, G;Launay, P;Wang, A;Dietrich, MO;Medzhitov, R;
PMID: 36712030 | DOI: 10.1101/2023.01.19.524823
Nature
2021 Dec 01
Mulderrig, L;Garaycoechea, JI;Tuong, ZK;Millington, CL;Dingler, FA;Ferdinand, JR;Gaul, L;Tadross, JA;Arends, MJ;O'Rahilly, S;Crossan, GP;Clatworthy, MR;Patel, KJ;
PMID: 34819667 | DOI: 10.1038/s41586-021-04133-7
Description | ||
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sense Example: Hs-LAG3-sense | Standard probes for RNA detection are in antisense. Sense probe is reverse complent to the corresponding antisense probe. | |
Intron# Example: Mm-Htt-intron2 | Probe targets the indicated intron in the target gene, commonly used for pre-mRNA detection | |
Pool/Pan Example: Hs-CD3-pool (Hs-CD3D, Hs-CD3E, Hs-CD3G) | A mixture of multiple probe sets targeting multiple genes or transcripts | |
No-XSp Example: Hs-PDGFB-No-XMm | Does not cross detect with the species (Sp) | |
XSp Example: Rn-Pde9a-XMm | designed to cross detect with the species (Sp) | |
O# Example: Mm-Islr-O1 | Alternative design targeting different regions of the same transcript or isoforms | |
CDS Example: Hs-SLC31A-CDS | Probe targets the protein-coding sequence only | |
EnEm | Probe targets exons n and m | |
En-Em | Probe targets region from exon n to exon m | |
Retired Nomenclature | ||
tvn Example: Hs-LEPR-tv1 | Designed to target transcript variant n | |
ORF Example: Hs-ACVRL1-ORF | Probe targets open reading frame | |
UTR Example: Hs-HTT-UTR-C3 | Probe targets the untranslated region (non-protein-coding region) only | |
5UTR Example: Hs-GNRHR-5UTR | Probe targets the 5' untranslated region only | |
3UTR Example: Rn-Npy1r-3UTR | Probe targets the 3' untranslated region only | |
Pan Example: Pool | A mixture of multiple probe sets targeting multiple genes or transcripts |
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