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Probes for INS

ACD can configure probes for the various manual and automated assays for INS for RNAscope Assay, or for Basescope Assay compatible for your species of interest.

  • Probes for INS (0)
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Refine Probe List

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Gene

  • TBD (5) Apply TBD filter
  • Axin2 (4) Apply Axin2 filter
  • CD4 (4) Apply CD4 filter
  • CXCL10 (4) Apply CXCL10 filter
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  • Wnt4 (3) Apply Wnt4 filter
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  • Lgr5 (3) Apply Lgr5 filter
  • Foxp3 (3) Apply Foxp3 filter
  • Sftpc (3) Apply Sftpc filter
  • Mc3r (3) Apply Mc3r filter
  • Cre (3) Apply Cre filter
  • SARS-CoV-2 (3) Apply SARS-CoV-2 filter
  • MEG3 (2) Apply MEG3 filter
  • Wnt16 (2) Apply Wnt16 filter
  • Fgfr3 (2) Apply Fgfr3 filter
  • CD68 (2) Apply CD68 filter
  • Cd8a (2) Apply Cd8a filter
  • COL1A1 (2) Apply COL1A1 filter
  • Rspo1 (2) Apply Rspo1 filter
  • Il10 (2) Apply Il10 filter
  • CSF1 (2) Apply CSF1 filter
  • Dll1 (2) Apply Dll1 filter
  • TH (2) Apply TH filter
  • FFAR1 (2) Apply FFAR1 filter
  • IL33 (2) Apply IL33 filter
  • JAG1 (2) Apply JAG1 filter
  • Hopx (2) Apply Hopx filter
  • PECAM1 (2) Apply PECAM1 filter
  • Spp1 (2) Apply Spp1 filter
  • MKI67 (2) Apply MKI67 filter
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  • PDGFRA (2) Apply PDGFRA filter
  • Cxcl1 (2) Apply Cxcl1 filter
  • Pomc (2) Apply Pomc filter
  • APOL1 (2) Apply APOL1 filter
  • IL-8 (2) Apply IL-8 filter
  • TNF-α (2) Apply TNF-α filter
  • (-) Remove Il-6 filter Il-6 (2)
  • k (2) Apply k filter
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  • Cx3cr1 (2) Apply Cx3cr1 filter
  • Kcnq1 (2) Apply Kcnq1 filter
  • CD3 (2) Apply CD3 filter
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Product

  • (-) Remove RNAscope 2.5 HD Duplex filter RNAscope 2.5 HD Duplex (2)

Research area

  • Cancer (2) Apply Cancer filter
  • Inflammation (1) Apply Inflammation filter

Category

  • Publications (2) Apply Publications filter
TNF-α expression, risk factors, and inflammatory exposures in ovarian cancer: evidence for an inflammatory pathway of ovarian carcinogenesis?

Human Pathology

2016 Apr 08

Gupta M, Babic A, Beck AH, Terry K.
PMID: - | DOI: 10.1016/j.humpath.2016.03.006

Inflammatory cytokines, like tumor necrosis factor alpha (TNF-α) and interleukin 6 (IL-6), are elevated in ovarian cancer. Differences in cytokine expression by histologic subytpe or ovarian cancer risk factors can provide useful insight into ovarian cancer risk and etiology. We used ribonucleic acid (RNA) in-situ hybridization to assess TNF-α and IL-6 expression on tissue microarray slides from 78 epithelial ovarian carcinomas (51 serous, 12 endometrioid, 7 clear cell, 2 mucinous, 6 other) from a population-based case control study. Cytokine expression was scored semi-quantitatively and odds ratios (OR) and 95% confidence intervals (CI) were calculated using polytomous logistic regression. TNF-α was expressed in 46% of the tumors while sparse IL-6 expression was seen only 18% of the tumors. For both markers, expression was most common in high grade serous carcinomas followed by endometrioid carcinomas. Parity was associated with a reduced risk of TNF-α positive (OR = 0.3, 95% CI: 0.1-0.7 for 3 or more children versus none) but not TNF-α negative tumors (p-heterogeneity = 0.02). In contrast, current smoking was associated with a nearly three fold increase in risk of TNF-α negative (OR = 2.8, 95% CI: 1.2, 6.6) but not TNF-α positive tumors (p-heterogeneity = 0.06). Our data suggests that TNF-α expression in ovarian carcinoma varies by histologic subtype and provides some support for the role of inflammation in ovarian carcinogenesis. The novel associations detected in our study need to be validated in a larger cohort of patients in future studies.

Triple-negative breast cancers with amplification of JAK2 at the 9p24 locus demonstrate JAK2-specific dependence

Sci Transl Med.

2016 Apr 13

Balko JM, Schwarz LJ, Luo N, Estrada MV, Giltnane JM, Dávila-González D, Wang K, Sánchez V, Dean PT, Combs SE, Hicks D, Pinto JA, Landis MD, Doimi FD, Yelensky R, Miller VA, Stephens PJ, Rimm DL, Gómez H, Chang JC, Sanders ME, Cook RS, Arteaga CL.
PMID: 27075627 | DOI: 10.1126/scitranslmed.aad3001

Amplifications at 9p24 have been identified in breast cancer and other malignancies, but the genes within this locus causally associated with oncogenicity or tumor progression remain unclear. Targeted next-generation sequencing of postchemotherapy triple-negative breast cancers (TNBCs) identified a group of 9p24-amplified tumors, which contained focal amplification of the Janus kinase 2 (JAK2) gene. These patients had markedly inferior recurrence-free and overall survival compared to patients with TNBC withoutJAK2amplification. Detection ofJAK2/9p24 amplifications was more common in chemotherapy-treated TNBCs than in untreated TNBCs or basal-like cancers, or in other breast cancer subtypes. Similar rates ofJAK2amplification were confirmed in patient-derived TNBC xenografts. In patients for whom longitudinal specimens were available,JAK2amplification was selected for during neoadjuvant chemotherapy and eventual metastatic spread, suggesting a role in tumorigenicity and chemoresistance, phenotypes often attributed to a cancer stem cell-like cell population. In TNBC cell lines withJAK2copy gains or amplification, specific inhibition of JAK2 signaling reduced mammosphere formation and cooperated with chemotherapy in reducing tumor growth in vivo. In these cells, inhibition of JAK1-signal transducer and activator of transcription 3 (STAT3) signaling had little effect or, in some cases, counteracted JAK2-specific inhibition. Collectively, these results suggest that JAK2-specific inhibitors are more efficacious than dual JAK1/2 inhibitors against JAK2-amplified TNBCs. Furthermore,JAK2amplification is a potential biomarker for JAK2 dependence, which, in turn, can be used to select patients for clinical trials with JAK2 inhibitors.

X
Description
sense
Example: Hs-LAG3-sense
Standard probes for RNA detection are in antisense. Sense probe is reverse complent to the corresponding antisense probe.
Intron#
Example: Mm-Htt-intron2
Probe targets the indicated intron in the target gene, commonly used for pre-mRNA detection
Pool/Pan
Example: Hs-CD3-pool (Hs-CD3D, Hs-CD3E, Hs-CD3G)
A mixture of multiple probe sets targeting multiple genes or transcripts
No-XSp
Example: Hs-PDGFB-No-XMm
Does not cross detect with the species (Sp)
XSp
Example: Rn-Pde9a-XMm
designed to cross detect with the species (Sp)
O#
Example: Mm-Islr-O1
Alternative design targeting different regions of the same transcript or isoforms
CDS
Example: Hs-SLC31A-CDS
Probe targets the protein-coding sequence only
EnEmProbe targets exons n and m
En-EmProbe targets region from exon n to exon m
Retired Nomenclature
tvn
Example: Hs-LEPR-tv1
Designed to target transcript variant n
ORF
Example: Hs-ACVRL1-ORF
Probe targets open reading frame
UTR
Example: Hs-HTT-UTR-C3
Probe targets the untranslated region (non-protein-coding region) only
5UTR
Example: Hs-GNRHR-5UTR
Probe targets the 5' untranslated region only
3UTR
Example: Rn-Npy1r-3UTR
Probe targets the 3' untranslated region only
Pan
Example: Pool
A mixture of multiple probe sets targeting multiple genes or transcripts

Enabling research, drug development (CDx) and diagnostics

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