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Probes for GATA6

ACD can configure probes for the various manual and automated assays for GATA6 for RNAscope Assay, or for Basescope Assay compatible for your species of interest.

  • Probes for GATA6 (0)
  • Kits & Accessories (0)
  • Support & Documents (0)
  • Publications (1)
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Refine Probe List

Content for comparison

Gene

  • GATA6 (5) Apply GATA6 filter
  • Sox9 (1) Apply Sox9 filter
  • CD248 (1) Apply CD248 filter
  • CFTR (1) Apply CFTR filter
  • CLDN6 (1) Apply CLDN6 filter
  • GATA4 (1) Apply GATA4 filter
  • Dkk2 (1) Apply Dkk2 filter
  • JAG1 (1) Apply JAG1 filter
  • KRT7 (1) Apply KRT7 filter
  • TWIST1 (1) Apply TWIST1 filter
  • Cldn7 (1) Apply Cldn7 filter
  • TNF-α (1) Apply TNF-α filter
  • SRY (1) Apply SRY filter
  • HNF1B (1) Apply HNF1B filter
  • ONECUT1 (1) Apply ONECUT1 filter
  • CLDN15 (1) Apply CLDN15 filter
  • (-) Remove miRNA-221 filter miRNA-221 (1)
  • Myl3 (1) Apply Myl3 filter
  • TBD (1) Apply TBD filter
  • Cherry (1) Apply Cherry filter

Product

  • RNAscope 2.5 HD Red assay (1) Apply RNAscope 2.5 HD Red assay filter

Research area

  • Cancer (1) Apply Cancer filter

Category

  • Publications (1) Apply Publications filter
Dickkopf-2 (DKK2) as Context Dependent Factor in Patients with Esophageal Adenocarcinoma.

Cancers

2020 Feb 14

Schiffmann LM, Loeser H, Jacob AS, Maus M, Fuchs H, Zhao Y, Tharun L, Essakly A, Iannos Damanakis A, Zander T, B�ttner R, Schr�der W, Bruns C, Quaas A, Gebauer F
PMID: 32075129 | DOI: 10.3390/cancers12020451

Dickkopf-2 (DKK2) has been described as Wnt/beta-catenin pathway antagonist and its expression is mediated by micro RNA-221 (miRNA-221). So far, there is only limited data characterizing the role of DKK2 expression in esophageal cancer. A tissue micro array of 192 patients with esophageal adenocarcinoma was analyzed immunohistochemically for DKK2, miRNA-221 expression by RNA scope, and GATA6 amplification by fluorescence in-situ hybridization. The data was correlated with clinical, pathological and molecular data (TP53, HER2, c-myc, GATA6, PIK3CA, and KRAS amplifications). DKK2 expression was detectable in 21.7% and miRNA-221 expression in 33.5% of the patients. We observed no correlation between DKK2 or miRNA-221 expression and clinico-pathological data DKK2 expression was correlated with TP53 mutations and amplification of GATA6. We did not detect a survival difference in dependence of DKK2 for the total cohort, however, in patients without neoadjuvant treatment DKK2 expression correlated with a prolonged survival (median overall-survival 202 vs. 55 months, p = 0.012) which turned opposite in patients that underwent neoadjuvant treatment. High amounts of miRNA-221 were in trend associated with a prolonged overall-survival (p = 0.070). DKK2 as a Wnt antagonist is associated with prolonged survival in patients without neoadjuvant treatment and changes its prognostic value to the contrary in patients after neoadjuvant therapy. The modulatory effects of neoadjuvant treatment in connection with DKK2 expression are not fully understood, but when considering DKK2 as a tumor marker, it is necessary to see it in the context of neoadjuvant therapy
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Description
sense
Example: Hs-LAG3-sense
Standard probes for RNA detection are in antisense. Sense probe is reverse complent to the corresponding antisense probe.
Intron#
Example: Mm-Htt-intron2
Probe targets the indicated intron in the target gene, commonly used for pre-mRNA detection
Pool/Pan
Example: Hs-CD3-pool (Hs-CD3D, Hs-CD3E, Hs-CD3G)
A mixture of multiple probe sets targeting multiple genes or transcripts
No-XSp
Example: Hs-PDGFB-No-XMm
Does not cross detect with the species (Sp)
XSp
Example: Rn-Pde9a-XMm
designed to cross detect with the species (Sp)
O#
Example: Mm-Islr-O1
Alternative design targeting different regions of the same transcript or isoforms
CDS
Example: Hs-SLC31A-CDS
Probe targets the protein-coding sequence only
EnEmProbe targets exons n and m
En-EmProbe targets region from exon n to exon m
Retired Nomenclature
tvn
Example: Hs-LEPR-tv1
Designed to target transcript variant n
ORF
Example: Hs-ACVRL1-ORF
Probe targets open reading frame
UTR
Example: Hs-HTT-UTR-C3
Probe targets the untranslated region (non-protein-coding region) only
5UTR
Example: Hs-GNRHR-5UTR
Probe targets the 5' untranslated region only
3UTR
Example: Rn-Npy1r-3UTR
Probe targets the 3' untranslated region only
Pan
Example: Pool
A mixture of multiple probe sets targeting multiple genes or transcripts

Enabling research, drug development (CDx) and diagnostics

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