ACD can configure probes for the various manual and automated assays for EDN1 for RNAscope Assay, or for Basescope Assay compatible for your species of interest.
Development
2015 Sep 28
Laumonnerie C, Bechara A, Vilain N, Kurihara Y, Kurihara H, Rijli FM.
PMID: 26417040 | DOI: 10.1242/dev.128736
Facial somatosensory input is relayed by trigeminal ganglion (TG) neurons and serially wired to brainstem, thalamus, and cortex. Spatially ordered sets of target neurons generate central topographic maps reproducing the spatial arrangement of peripheral receptors on the face. Facial patternprovides a template for map formation, but whether it is sufficient to impose a brain somatotopic pattern is unclear. In the mouse, lower jaw sensory information is relayed by the trigeminal nerve mandibular branch, whose axons target the brainstem dorsal principal sensory trigeminal nucleus (dPrV). Input from mystacial whiskers on the snout is relayed by the maxillary branch and form a topographic representation of rows and whiskers in the ventral principal trigeminal nucleus (vPrV). To investigate the importance of peripheral organisation in imposing a brain topographic pattern, we analysed the Edn1 mutant mice, in which lower-to-upper jaw transformation results in ectopic whisker rows on the lower jaw. In Edn1 mice, the lower jaw ectopic whiskers were innervated by mandibular TG neurons which initially targeted dPrV. Unlike maxillary TG neurons, the ectopic whisker-innervating mandibular neuron cell bodies and pre-target central axons did not segregate into a row-specific pattern nor targeted the dPrV with a topographic pattern. Following periphery-driven molecular repatterning to a maxillary-like identity, mandibular neurons redirected partially their central projections from dorsal to ventral PrV. Thus, a spatially ordered ectopic whisker pattern on the lower jaw is not sufficient to impose row-specific pre-target organization of the central mandibular tract nor a whisker-related matching pattern of afferents in dPrV, albeit still able to induce maxillary-like molecular features resulting in vPrV final targeting. These results provide novel insights into the relative importance of periphery-dependent versus periphery-independent mechanisms of trigeminal ganglion and brainstem patterning in matching facial whisker topography in the brainstem.
Nature communications
2023 May 04
Bian, F;Lan, YW;Zhao, S;Deng, Z;Shukla, S;Acharya, A;Donovan, J;Le, T;Milewski, D;Bacchetta, M;Hozain, AE;Tipograf, Y;Chen, YW;Xu, Y;Shi, D;Kalinichenko, VV;Kalin, TV;
PMID: 37137915 | DOI: 10.1038/s41467-023-38177-2
Nature cell biology
2023 Jan 30
Martino, P;Sunkara, R;Heitman, N;Rangl, M;Brown, A;Saxena, N;Grisanti, L;Kohan, D;Yanagisawa, M;Rendl, M;
PMID: 36717629 | DOI: 10.1038/s41556-022-01065-w
Description | ||
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sense Example: Hs-LAG3-sense | Standard probes for RNA detection are in antisense. Sense probe is reverse complent to the corresponding antisense probe. | |
Intron# Example: Mm-Htt-intron2 | Probe targets the indicated intron in the target gene, commonly used for pre-mRNA detection | |
Pool/Pan Example: Hs-CD3-pool (Hs-CD3D, Hs-CD3E, Hs-CD3G) | A mixture of multiple probe sets targeting multiple genes or transcripts | |
No-XSp Example: Hs-PDGFB-No-XMm | Does not cross detect with the species (Sp) | |
XSp Example: Rn-Pde9a-XMm | designed to cross detect with the species (Sp) | |
O# Example: Mm-Islr-O1 | Alternative design targeting different regions of the same transcript or isoforms | |
CDS Example: Hs-SLC31A-CDS | Probe targets the protein-coding sequence only | |
EnEm | Probe targets exons n and m | |
En-Em | Probe targets region from exon n to exon m | |
Retired Nomenclature | ||
tvn Example: Hs-LEPR-tv1 | Designed to target transcript variant n | |
ORF Example: Hs-ACVRL1-ORF | Probe targets open reading frame | |
UTR Example: Hs-HTT-UTR-C3 | Probe targets the untranslated region (non-protein-coding region) only | |
5UTR Example: Hs-GNRHR-5UTR | Probe targets the 5' untranslated region only | |
3UTR Example: Rn-Npy1r-3UTR | Probe targets the 3' untranslated region only | |
Pan Example: Pool | A mixture of multiple probe sets targeting multiple genes or transcripts |
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