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Probes for P16

ACD can configure probes for the various manual and automated assays for P16 for RNAscope Assay, or for Basescope Assay compatible for your species of interest.

  • Probes for P16 (0)
  • Kits & Accessories (0)
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  • Publications (2)
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Refine Probe List

Content for comparison

RNAscope™ HiPlex Probe - Cj-SPP1-T9
RNAscope™ HiPlex Probe - HPV LR6-T8
RNAscope™ 2.5 LS Probe - HPV16/18-C5
Compare SelectedClear

Gene

  • HPV E6/E7 (51) Apply HPV E6/E7 filter
  • CDKN2A (28) Apply CDKN2A filter
  • TBD (15) Apply TBD filter
  • HPV-HR18 (8) Apply HPV-HR18 filter
  • HPV18 (5) Apply HPV18 filter
  • HPV (5) Apply HPV filter
  • 18 (5) Apply 18 filter
  • 31 (5) Apply 31 filter
  • 33 (5) Apply 33 filter
  • HPV16 (4) Apply HPV16 filter
  • p16 (4) Apply p16 filter
  • 35 (4) Apply 35 filter
  • 52 (4) Apply 52 filter
  • HPV HR18 (3) Apply HPV HR18 filter
  • 39 (3) Apply 39 filter
  • 45 (3) Apply 45 filter
  • 51 (3) Apply 51 filter
  • 56 (3) Apply 56 filter
  • 58 (3) Apply 58 filter
  • 59 (3) Apply 59 filter
  • egfp (2) Apply egfp filter
  • HPV16/18 (2) Apply HPV16/18 filter
  • HPV HR7 (2) Apply HPV HR7 filter
  • E7 (2) Apply E7 filter
  • 26 (2) Apply 26 filter
  • HPV 16 (2) Apply HPV 16 filter
  • 53 (2) Apply 53 filter
  • 66 (2) Apply 66 filter
  • 68 (2) Apply 68 filter
  • 73 (2) Apply 73 filter
  • 82 (2) Apply 82 filter
  • CD34 (1) Apply CD34 filter
  • Vegfa (1) Apply Vegfa filter
  • MDM2 (1) Apply MDM2 filter
  • Cxcl1 (1) Apply Cxcl1 filter
  • HPV31 (1) Apply HPV31 filter
  • HPV33 (1) Apply HPV33 filter
  • (-) Remove HPV35 filter HPV35 (1)
  • HPV52 (1) Apply HPV52 filter
  • HPV58 (1) Apply HPV58 filter
  • E6 (1) Apply E6 filter
  • IL-8 (1) Apply IL-8 filter
  • HER3 (1) Apply HER3 filter
  • Heregulin (1) Apply Heregulin filter
  • p16LUC (1) Apply p16LUC filter
  • p21 (1) Apply p21 filter
  • Cyp2b10 (1) Apply Cyp2b10 filter
  • HPV-HR16 (1) Apply HPV-HR16 filter
  • (-) Remove HPV-16/18 filter HPV-16/18 (1)
  • HR-HPV-18 (1) Apply HR-HPV-18 filter

Product

  • RNAscope 2.0 Assay (1) Apply RNAscope 2.0 Assay filter

Research area

  • Cancer (2) Apply Cancer filter
  • HPV (2) Apply HPV filter
  • Infectious Disease (2) Apply Infectious Disease filter

Category

  • Publications (2) Apply Publications filter
HPV-associated neuroendocrine carcinomas of the head and neck in FNA biopsies: Clinicopathologic features of a rare entity.

Cancer Cytopathol. 2018 Nov 26.

2018 Nov 26

Jo VY, Krane JF, Pantanowitz L, Monaco SE.
PMID: 30475447 | DOI: 10.1002/cncy.22075

Abstract BACKGROUND: The majority of human papillomavirus (HPV)-associated oropharyngeal carcinomas are squamous cell carcinomas; however, there are rare reports of HPV-associated neuroendocrine carcinomas (HPV-NECs) in the upper aerodigestive tract. The aim of this study was to characterize the diagnostic features of fine-needle aspiration (FNA) cases of head and neck HPV-NEC. METHODS: Cytology cases of HPV-NEC were identified over a 3-year period from 2 institutions. Clinical, cytomorphologic, and ancillary test results were evaluated. RESULTS: Five FNA cases of HPV-NEC were identified from 4 patients with cervical lymph node metastases with primaries in the oropharynx (n = 2), nasopharynx (n = 1), and larynx (n = 1). Three cases showed mixed small cell and large cell neuroendocrine morphologies; 1 case was a small cell carcinoma, and the last case appeared as a large cell neuroendocrine carcinoma. All tumors were strongly positive for synaptophysin and p16 and negative for p63/p40. Two cases tested for INSM1 showed diffuse nuclear staining. HPV was confirmed by in situ hybridization in 4 cases, and HPV-18 was detected by polymerase chain reaction in the fifth case. Retinoblastoma (Rb) staining was moderate to weak (5/5), and p53 was weakly positive (5/5). CONCLUSIONS: Head and neck HPV-NEC is a rare, aggressive entity that can show mixed small and large cell features and p16 upregulation; p53 and Rb are variable with limited diagnostic utility. Because p16 positivity can be nonspecific, confirmatory HPV testing is required and may be helpful in determining the primary site for neuroendocrine carcinoma of an unknown primary. The accurate diagnosis of HPV-NEC is also important because of its worse prognosis in comparison with HPV-associated squamous cell carcinoma.
Prevalence of HPV infection in head and neck carcinomas shows geographical variability: a comparative study from Brazil and Germany

Virchows Archiv (2015): 1-9.

Hauck F, Oliveira-Silva M, Dreyer JH, Ferreira Perrusi VJ, Arcuri RA, Hassan R, Bonvicino CR, Barros MHM, Niedobitek G.
PMID: 25820374 | DOI: 10.1007/s00428-015-1761-4

Rising prevalence rates of high-risk human papillomaviruses (hrHPV) infection in oropharyngeal carcinoma (up to 80 %) have been reported in North America and Scandinavia. We have analysed 424 German and 163 Brazilian head and neck squamous cell carcinomas (HNSCC) from the oral cavity (OSCC), oropharynx (OPSCC) and hypopharynx (HPSCC) using p16 immunohistochemistry, HPV DNA PCR and sequencing, hrHPV DNA in situ hybridisation (ISH) and hrHPV E6/E7 RNA ISH. In the German series, 52/424 cases (12.3 %) were p16-positive/hrHPV-positive (OSCC 3.8 % [10/265], OPSCC 34.4 % [42/122], HPSCC 0 % [0/37]). In addition, there were 9 cases that were p16-positive/hrHPV-negative (5 OPSCC and 4 OSCC). In the Brazilian series, the overall hrHPV DNA prevalence by PCR was 11.0 % ([18/163]; OSCC 6 % [5/83], OPSCC 15.5 % [11/71], HPSCC 22.2 % [2/9]). Ten of these cases were hrHPV-positive/p16-positive. The remaining 8 hrHPV-positive/p16-negative cases were also negative in both ISH assays. Furthermore, 5 p16-positive/hrHPV-negative cases (2 OPSCC and 3 OSCC) were identified. In both series, HPV16 was by far the most common HPV type detected. We confirm that regardless of geographical origin, the highest hrHPV prevalence in HNSCC is observed in oropharyngeal carcinomas. The proportion of HPV-associated OPSCC was substantially higher in the German cohort than in the Brazilian series (34.4 vs. 15.5 %), and in both groups, the prevalence of hrHPV in OPSCC was much lower than in recent reports from North America and Scandinavia. We suggest, therefore, that it may be possible to define areas with high (e.g. USA, Canada, Scandinavia), intermediate (e.g. Germany) and low (e.g. Brazil) prevalences of HPV infection in OPSCC.
X
Description
sense
Example: Hs-LAG3-sense
Standard probes for RNA detection are in antisense. Sense probe is reverse complent to the corresponding antisense probe.
Intron#
Example: Mm-Htt-intron2
Probe targets the indicated intron in the target gene, commonly used for pre-mRNA detection
Pool/Pan
Example: Hs-CD3-pool (Hs-CD3D, Hs-CD3E, Hs-CD3G)
A mixture of multiple probe sets targeting multiple genes or transcripts
No-XSp
Example: Hs-PDGFB-No-XMm
Does not cross detect with the species (Sp)
XSp
Example: Rn-Pde9a-XMm
designed to cross detect with the species (Sp)
O#
Example: Mm-Islr-O1
Alternative design targeting different regions of the same transcript or isoforms
CDS
Example: Hs-SLC31A-CDS
Probe targets the protein-coding sequence only
EnEmProbe targets exons n and m
En-EmProbe targets region from exon n to exon m
Retired Nomenclature
tvn
Example: Hs-LEPR-tv1
Designed to target transcript variant n
ORF
Example: Hs-ACVRL1-ORF
Probe targets open reading frame
UTR
Example: Hs-HTT-UTR-C3
Probe targets the untranslated region (non-protein-coding region) only
5UTR
Example: Hs-GNRHR-5UTR
Probe targets the 5' untranslated region only
3UTR
Example: Rn-Npy1r-3UTR
Probe targets the 3' untranslated region only
Pan
Example: Pool
A mixture of multiple probe sets targeting multiple genes or transcripts

Enabling research, drug development (CDx) and diagnostics

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