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Training Webinar : Using CellProfiler to Analyze Your RNAscope® Images
Amber Jolly, PhD.
Image Analysis Scientist
Watch Video:

RNAscope® assay is an innovative and proprietary RNA in situ hybridization (ISH) assay based on ACD’s patented technology with signal amplification and simultaneous background noise suppression. RNAscope® assay delivers quantitative, sensitive and specific molecular detection of RNA species on a cell-by-cell basis with anatomical context in a single assay. 


View the Fluorescent Assay CellProfiler Demo


View the Chromogenic Assay CellProfiler Demo


Download the Tech Note

Who should attend:


  • Pathologists who may or may not be familiar with RNAscope® ISH
  • New and existing RNAscope® Assay users (manual and automated assay platforms)
  • Traditional ISH users new to the RNAscope® technology
  • IHC users interested in RNA ISH for complementary studies
  • RNAscope users interested in Open Source image analysis options
Learning Objectives:

In this webinar, we will focus on how to analyze RNAscope® assay data images using the open source platform CellProfiler. We will cover the following topics:

  • RNAscope® technology introduction and overview
  • RNAscope® and BasescopeTM data interpretation
  • Scoring guidelines for RNAscope and Basescope assays
  • RNAscope assay images quality control
  • CellProfiler image analysis workflow
  • CellProfiler Demo
Contact Us

Complete one of the three forms below and we will get back to you.

Advanced Cell Diagnostics

Our new headquarters office starting May 2016:

7707 Gateway Blvd.  
Newark, CA 94560
Toll Free: 1 (877) 576-3636
Phone: (510) 576-8800
Fax: (510) 576-8798



19 Barton Lane  
Abingdon Science Park
OX14 3NB
United Kingdom
Phone 2: +44 1235 529449
Fax: +44 1235 533420



Advanced Cell Diagnostics China

Building 15, No. 26 Xihuan South Road
Beijing Economic-Technological Development Area
Beijing, China, Zip code: 100176

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